seAMLess: A Single Cell Transcriptomics Based Deconvolution Pipeline for Leukemia

Given a bulk transcriptomic (RNA-seq) sample of an Myeloid Leukemia patient calculates immune composition and drug resistance for different small-molecule inhibitors. Published in <https://www.nature.com/articles/s41698-024-00596-9>.

Version: 0.1.1
Depends: R (≥ 3.5.0)
Imports: Biobase, ggplot2, optparse, data.table
Suggests: MuSiC, ggtern, seAMLessData, randomForest
Published: 2024-11-11
DOI: 10.32614/CRAN.package.seAMLess
Author: E Onur Karakaslar [aut, cre], Redmar van den Berg [ctb]
Maintainer: E Onur Karakaslar <eonurkara at gmail.com>
License: GPL-3
URL: https://github.com/eonurk/seAMLess
NeedsCompilation: no
Additional_repositories: https://eonurk.github.io/drat/
Materials: README
CRAN checks: seAMLess results

Documentation:

Reference manual: seAMLess.pdf

Downloads:

Package source: seAMLess_0.1.1.tar.gz
Windows binaries: r-devel: not available, r-release: not available, r-oldrel: seAMLess_0.1.1.zip
macOS binaries: r-release (arm64): seAMLess_0.1.1.tgz, r-oldrel (arm64): seAMLess_0.1.1.tgz, r-release (x86_64): seAMLess_0.1.1.tgz, r-oldrel (x86_64): seAMLess_0.1.1.tgz
Old sources: seAMLess archive

Linking:

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