FossilSim: Simulation and Plots for Fossil and Taxonomy Data

Simulating and plotting taxonomy and fossil data on phylogenetic trees under mechanistic models of speciation, preservation and sampling.

Version: 2.4.1
Depends: R (≥ 2.10)
Imports: ape, ggtree, ggfun, ggplot2, tidytree, methods, rlang
Suggests: paleotree, knitr, rmarkdown, devtools, TreeSim, treeio, ggrepel
Published: 2024-10-02
DOI: 10.32614/CRAN.package.FossilSim
Author: Rachel Warnock [aut, cph], Joelle Barido-Sottani [aut, cre, cph], Walker Pett [aut, cph], O'Reilly Joseph [aut, cph], UgnÄ— Stolz [aut, cph]
Maintainer: Joelle Barido-Sottani <joelle.barido-sottani at m4x.org>
License: GPL-3
NeedsCompilation: no
Language: en-GB
Materials: README NEWS
In views: Phylogenetics
CRAN checks: FossilSim results

Documentation:

Reference manual: FossilSim.pdf
Vignettes: Exporting sampled ancestor trees (source, R code)
Simulating fossils (source, R code)
Introduction to FossilSim (source, R code)
Converting from and to paleotree format (source, R code)
Simulating trees from the fossilized birth-death process (source, R code)
Simulating taxonomy (source, R code)

Downloads:

Package source: FossilSim_2.4.1.tar.gz
Windows binaries: r-devel: FossilSim_2.4.1.zip, r-release: FossilSim_2.4.1.zip, r-oldrel: FossilSim_2.4.1.zip
macOS binaries: r-release (arm64): FossilSim_2.4.1.tgz, r-oldrel (arm64): FossilSim_2.4.1.tgz, r-release (x86_64): FossilSim_2.4.1.tgz, r-oldrel (x86_64): FossilSim_2.4.1.tgz
Old sources: FossilSim archive

Reverse dependencies:

Reverse imports: FossilSimShiny

Linking:

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