Last updated on 2024-11-08 00:50:00 CET.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| dvir | 13 | ||
| forrel | 13 | ||
| IBDsim | 3 | 10 | |
| ibdsim2 | 13 | ||
| KLINK | 13 | ||
| paramlink | 1 | 3 | 9 |
| paramlink2 | 13 | ||
| pedbuildr | 13 | ||
| pedFamilias | 13 | ||
| pedmut | 13 | ||
| pedprobr | 3 | 10 | |
| pedsuite | 13 | ||
| pedtools | 13 | ||
| ribd | 13 | ||
| segregatr | 13 | ||
| verbalisr | 13 |
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: NOTE: 3, OK: 10
Version: 0.9-8
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
IBDsim.Rd: linkdat
oneLocusIBD.Rd: linkdat
oneLocusJacquard.Rd: jacquard, linkdat
twoLocusIBD.Rd: linkdat
twoLocusJacquard.Rd: linkdat, jacquard
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: ERROR: 1, NOTE: 3, OK: 9
Version: 1.1-5
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
plot.linkdat.Rd: plot.pedigree
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64
Version: 1.1-5
Check: examples
Result: ERROR
Running examples in ‘paramlink-Ex.R’ failed
The error most likely occurred in:
> ### Name: examineKinships
> ### Title: Check pedigree for relationship errors
> ### Aliases: examineKinships
>
> ### ** Examples
>
>
> x = cousinsPed(1)
> x = simpleSim(x, 500, alleles=1:2)
Autosomal marker locus.
Unconditional simulating of genotypes for individuals 1, 2, 3, 4, 5, 6, 7 and 8.
Alleles and frequencies:
1 2
0.5 0.5
500 markers simulated.
Number of calls to the likelihood function: 0.
Total time used: 0.018000 seconds.
> examineKinships(x)
Error in cbind(rep.int(i, length(rels)), rels, deparse.level = 0) :
cannot get data pointer of 'NULL' objects
Calls: examineKinships -> rbind -> related.pairs -> rbind -> cbind
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: NOTE: 3, OK: 10
Version: 0.9.4
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
genoCombinations.Rd: ped, marker
likelihood.Rd: marker, breakLoops
merlin.Rd: ped
oneMarkerDistribution.Rd: breakLoops
twoMarkerDistribution.Rd: breakLoops
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13
Current CRAN status: OK: 13