Last updated on 2024-09-01 01:48:23 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.1 | 7.63 | 635.51 | 643.14 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.1.1 | 5.18 | 429.59 | 434.77 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.1.1 | 995.59 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.1.1 | 1016.54 | OK | |||
| r-devel-windows-x86_64 | 1.1.1 | 10.00 | 416.00 | 426.00 | OK | |
| r-patched-linux-x86_64 | 1.1.1 | 7.48 | 603.04 | 610.52 | OK | |
| r-release-linux-x86_64 | 1.1.1 | 6.29 | 592.95 | 599.24 | OK | |
| r-release-macos-arm64 | 1.1.1 | 227.00 | OK | |||
| r-release-macos-x86_64 | 1.1.1 | 526.00 | OK | |||
| r-release-windows-x86_64 | 1.1.1 | 9.00 | 420.00 | 429.00 | OK | |
| r-oldrel-macos-arm64 | 1.1.1 | 292.00 | ERROR | |||
| r-oldrel-macos-x86_64 | 1.1.1 | 608.00 | ERROR | |||
| r-oldrel-windows-x86_64 | 1.1.1 | 12.00 | 607.00 | 619.00 | OK |
Version: 1.1.1
Check: running R code from vignettes
Result: ERROR
Errors in running code in vignettes:
when running code in ‘concept-intersect.Rmd’
...
> ggplot(dplyr::bind_rows(dplyr::mutate(dplyr::arrange(dplyr::collect(dplyr::tally(dplyr::group_by(addCohortIntersectCount(cdm$ankle_sprain,
+ ta .... [TRUNCATED]
When sourcing ‘concept-intersect.R’:
Error: ℹ In argument: `161_acetaminophen_minf_to_inf`
Caused by error:
! Object `161_acetaminophen_minf_to_inf` not found.
Execution halted
Warning: Connection is garbage-collected, use dbDisconnect() to avoid this.
‘cohort-intersect.Rmd’ using ‘UTF-8’... [19s/19s] OK
‘concept-intersect.Rmd’ using ‘UTF-8’... failed
‘demographics.rmd’ using ‘UTF-8’... [19s/20s] OK
‘summarise.Rmd’ using ‘UTF-8’... [23s/24s] OK
‘table-intersect.Rmd’ using ‘UTF-8’... [16s/17s] OK
Flavor: r-oldrel-macos-arm64
Version: 1.1.1
Check: re-building of vignette outputs
Result: NOTE
Error(s) in re-building vignettes:
--- re-building ‘cohort-intersect.Rmd’ using rmarkdown
--- finished re-building ‘cohort-intersect.Rmd’
Warning: Connection is garbage-collected, use dbDisconnect() to avoid this.
Warning: Connection is garbage-collected, use dbDisconnect() to avoid this.
--- re-building ‘concept-intersect.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
Content type 'application/zip' length 6754786 bytes (6.4 MB)
==================================================
downloaded 6.4 MB
Quitting from lines 185-229 [unnamed-chunk-11] (concept-intersect.Rmd)
Error: processing vignette 'concept-intersect.Rmd' failed with diagnostics:
ℹ In argument: `161_acetaminophen_minf_to_inf`
Caused by error:
! Object `161_acetaminophen_minf_to_inf` not found.
--- failed re-building ‘concept-intersect.Rmd’
Warning: Connection is garbage-collected, use dbDisconnect() to avoid this.
--- re-building ‘demographics.rmd’ using rmarkdown
--- finished re-building ‘demographics.rmd’
Warning: Connection is garbage-collected, use dbDisconnect() to avoid this.
--- re-building ‘summarise.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
Content type 'application/zip' length 6754786 bytes (6.4 MB)
==================================================
downloaded 6.4 MB
--- finished re-building ‘summarise.Rmd’
Warning: Connection is garbage-collected, use dbDisconnect() to avoid this.
--- re-building ‘table-intersect.Rmd’ using rmarkdown
trying URL 'https://example-data.ohdsi.dev/GiBleed.zip'
Content type 'application/zip' length 6754786 bytes (6.4 MB)
==================================================
downloaded 6.4 MB
--- finished re-building ‘table-intersect.Rmd’
Warning: Connection is garbage-collected, use dbDisconnect() to avoid this.
SUMMARY: processing the following file failed:
‘concept-intersect.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 1.1.1
Check: running R code from vignettes
Result: ERROR
Errors in running code in vignettes:
when running code in ‘concept-intersect.Rmd’
...
> ggplot(dplyr::bind_rows(dplyr::mutate(dplyr::arrange(dplyr::collect(dplyr::tally(dplyr::group_by(addCohortIntersectCount(cdm$ankle_sprain,
+ ta .... [TRUNCATED]
When sourcing ‘concept-intersect.R’:
Error: ℹ In argument: `161_acetaminophen_minf_to_inf`
Caused by error:
! Object `161_acetaminophen_minf_to_inf` not found.
Execution halted
Warning: Connection is garbage-collected, use dbDisconnect() to avoid this.
‘cohort-intersect.Rmd’ using ‘UTF-8’... [35s/48s] OK
‘concept-intersect.Rmd’ using ‘UTF-8’... failed
‘demographics.rmd’ using ‘UTF-8’... [28s/38s] OK
‘summarise.Rmd’ using ‘UTF-8’... [37s/62s] OK
‘table-intersect.Rmd’ using ‘UTF-8’... [25s/33s] OK
Flavor: r-oldrel-macos-x86_64