BamTools
2.5.1
BamTools
BamReader
BamTools::BamReader Member List
This is the complete list of members for
BamTools::BamReader
, including all inherited members.
BamReader
()
BamTools::BamReader
Close
()
BamTools::BamReader
CreateIndex
(const BamIndex::IndexType &type=BamIndex::STANDARD)
BamTools::BamReader
GetConstSamHeader
() const
BamTools::BamReader
GetErrorString
() const
BamTools::BamReader
GetFilename
() const
BamTools::BamReader
GetHeader
() const
BamTools::BamReader
GetHeaderText
() const
BamTools::BamReader
GetNextAlignment
(BamAlignment &alignment)
BamTools::BamReader
GetNextAlignmentCore
(BamAlignment &alignment)
BamTools::BamReader
GetReferenceCount
() const
BamTools::BamReader
GetReferenceData
() const
BamTools::BamReader
GetReferenceID
(const std::string &refName) const
BamTools::BamReader
HasIndex
() const
BamTools::BamReader
IsOpen
() const
BamTools::BamReader
Jump
(int refID, int position=0)
BamTools::BamReader
LocateIndex
(const BamIndex::IndexType &preferredType=BamIndex::STANDARD)
BamTools::BamReader
Open
(const std::string &filename)
BamTools::BamReader
OpenIndex
(const std::string &indexFilename)
BamTools::BamReader
Rewind
()
BamTools::BamReader
SetIndex
(BamIndex *index)
BamTools::BamReader
SetRegion
(const BamRegion ®ion)
BamTools::BamReader
SetRegion
(const int &leftRefID, const int &leftPosition, const int &rightRefID, const int &rightPosition)
BamTools::BamReader
~BamReader
()
BamTools::BamReader
Generated by
1.8.16