Last updated on 2024-10-19 01:49:26 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.2.5 | 3.24 | 751.23 | 754.47 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.2.5 | 2.12 | 423.24 | 425.36 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.2.5 | 1317.40 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 0.2.5 | 1237.34 | OK | |||
| r-devel-windows-x86_64 | 0.2.5 | 4.00 | 598.00 | 602.00 | OK | |
| r-patched-linux-x86_64 | 0.2.5 | OK | ||||
| r-release-linux-x86_64 | 0.2.5 | 3.48 | 686.29 | 689.77 | OK | |
| r-release-macos-arm64 | 0.2.5 | 277.00 | OK | |||
| r-release-macos-x86_64 | 0.2.5 | 1005.00 | OK | |||
| r-release-windows-x86_64 | 0.2.5 | 7.00 | 626.00 | 633.00 | OK | |
| r-oldrel-macos-arm64 | 0.2.5 | 471.00 | OK | |||
| r-oldrel-macos-x86_64 | 0.2.5 | 1487.00 | OK | |||
| r-oldrel-windows-x86_64 | 0.2.5 | 6.00 | 835.00 | 841.00 | OK |
Version: 0.2.5
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘closed-testing.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-clang/graphicalMCP.Rcheck/vign_test/graphicalMCP/vignettes/closed-testing_files/figure-html/create-graph-1.png
480x326 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 36458 bytes
Input file size = 36584 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27851
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27851
Output IDAT size = 27851 bytes (8607 bytes decrease)
Output file size = 27929 bytes (8655 bytes = 23.66% decrease)
--- finished re-building ‘closed-testing.Rmd’
--- re-building ‘comparisons.Rmd’ using rmarkdown
--- finished re-building ‘comparisons.Rmd’
--- re-building ‘generate-closure.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-clang/graphicalMCP.Rcheck/vign_test/graphicalMCP/vignettes/generate-closure_files/figure-html/base-graph-1-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 15928 bytes
Input file size = 16018 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12352
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12352
Output IDAT size = 12352 bytes (3576 bytes decrease)
Output file size = 12430 bytes (3588 bytes = 22.40% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/graphicalMCP.Rcheck/vign_test/graphicalMCP/vignettes/generate-closure_files/figure-html/plot-gw-benchmarks-1.png
768x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 43873 bytes
Input file size = 44011 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36713
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 36713
Output IDAT size = 36713 bytes (7160 bytes decrease)
Output file size = 36791 bytes (7220 bytes = 16.40% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/graphicalMCP.Rcheck/vign_test/graphicalMCP/vignettes/generate-closure_files/figure-html/plot-power-benchmarks-1.png
768x480 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 50130 bytes
Input file size = 50280 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40988
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 40988
Output IDAT size = 40988 bytes (9142 bytes decrease)
Output file size = 41066 bytes (9214 bytes = 18.33% decrease)
--- finished re-building ‘generate-closure.Rmd’
--- re-building ‘glossary.Rmd’ using rmarkdown
--- finished re-building ‘glossary.Rmd’
--- re-building ‘graph-examples.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-clang/graphicalMCP.Rcheck/vign_test/graphicalMCP/vignettes/graph-examples_files/figure-html/bonferroni-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 10181 bytes
Input file size = 10271 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8168
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8168
Output IDAT size = 8168 bytes (2013 bytes decrease)
Output file size = 8246 bytes (2025 bytes = 19.72% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/graphicalMCP.Rcheck/vign_test/graphicalMCP/vignettes/graph-examples_files/figure-html/bonferroni-holm-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 19541 bytes
Input file size = 19643 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15033
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15033
Output IDAT size = 15033 bytes (4508 bytes decrease)
Output file size = 15111 bytes (4532 bytes = 23.07% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/graphicalMCP.Rcheck/vign_test/graphicalMCP/vignettes/graph-examples_files/figure-html/fixed-sequence-1-1.png
432x86 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 8790 bytes
Input file size = 8880 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6948
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6948
Output IDAT size = 6948 bytes (1842 bytes decrease)
Output file size = 7026 bytes (1854 bytes = 20.88% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/graphicalMCP.Rcheck/vign_test/graphicalMCP/vignettes/graph-examples_files/figure-html/fallback-1.png
432x86 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 9747 bytes
Input file size = 9837 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7598
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7598
Output IDAT size = 7598 bytes (2149 bytes decrease)
Output file size = 7676 bytes (2161 bytes = 21.97% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/graphicalMCP.Rcheck/vign_test/graphicalMCP/vignettes/graph-examples_files/figure-html/fallback-improved-1.png
432x86 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 13643 bytes
Input file size = 13733 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10403
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10403
Output IDAT size = 10403 bytes (3240 bytes decrease)
Output file size = 10481 bytes (3252 bytes = 23.68% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/graphicalMCP.Rcheck/vign_test/graphicalMCP/vignettes/graph-examples_files/figure-html/fallback-improved-2.png
432x86 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 13543 bytes
Input file size = 13633 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10201
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10201
Output IDAT size = 10201 bytes (3342 bytes decrease)
Output file size = 10279 bytes (3354 bytes = 24.60% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/graphicalMCP.Rcheck/vign_test/graphicalMCP/vignettes/graph-examples_files/figure-html/serial-gatekeeping-1.png
432x86 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 11144 bytes
Input file size = 11234 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8612
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8612
Output IDAT size = 8612 bytes (2532 bytes decrease)
Output file size = 8690 bytes (2544 bytes = 22.65% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/graphicalMCP.Rcheck/vign_test/graphicalMCP/vignettes/graph-examples_files/figure-html/parallel-gatekeeping-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 17958 bytes
Input file size = 18060 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14240
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14240
Output IDAT size = 14240 bytes (3718 bytes decrease)
Output file size = 14318 bytes (3742 bytes = 20.72% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/graphicalMCP.Rcheck/vign_test/graphicalMCP/vignettes/graph-examples_files/figure-html/parallel-gatekeeping-improved-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 21206 bytes
Input file size = 21308 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17207
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17207
Output IDAT size = 17207 bytes (3999 bytes decrease)
Output file size = 17285 bytes (4023 bytes = 18.88% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/graphicalMCP.Rcheck/vign_test/graphicalMCP/vignettes/graph-examples_files/figure-html/simple-successive-1-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 14673 bytes
Input file size = 14763 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11659
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11659
Output IDAT size = 11659 bytes (3014 bytes decrease)
Output file size = 11737 bytes (3026 bytes = 20.50% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/graphicalMCP.Rcheck/vign_test/graphicalMCP/vignettes/graph-examples_files/figure-html/simple-successive-var-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 17951 bytes
Input file size = 18053 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14108
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14108
Output IDAT size = 14108 bytes (3843 bytes decrease)
Output file size = 14186 bytes (3867 bytes = 21.42% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/graphicalMCP.Rcheck/vign_test/graphicalMCP/vignettes/graph-examples_files/figure-html/hommel-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 19541 bytes
Input file size = 19643 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15033
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15033
Output IDAT size = 15033 bytes (4508 bytes decrease)
Output file size = 15111 bytes (4532 bytes = 23.07% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/graphicalMCP.Rcheck/vign_test/graphicalMCP/vignettes/graph-examples_files/figure-html/dunnett-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 19541 bytes
Input file size = 19643 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15033
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15033
Output IDAT size = 15033 bytes (4508 bytes decrease)
Output file size = 15111 bytes (4532 bytes = 23.07% decrease)
--- finished re-building ‘graph-examples.Rmd’
--- re-building ‘graphicalMCP.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-clang/graphicalMCP.Rcheck/vign_test/graphicalMCP/vignettes/graphicalMCP_files/figure-html/plot-graph-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 12984 bytes
Input file size = 13074 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10027
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10027
Output IDAT size = 10027 bytes (2957 bytes decrease)
Output file size = 10105 bytes (2969 bytes = 22.71% decrease)
** Processing: /data/gannet/ripley/R/packages/tests-clang/graphicalMCP.Rcheck/vign_test/graphicalMCP/vignettes/graphicalMCP_files/figure-html/plot-updated-graph-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 10445 bytes
Input file size = 10535 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8318
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 8318
Output IDAT size = 8318 bytes (2127 bytes decrease)
Output file size = 8396 bytes (2139 bytes = 20.30% decrease)
--- finished re-building ‘graphicalMCP.Rmd’
--- re-building ‘shortcut-testing.Rmd’ using rmarkdown
** Processing: /data/gannet/ripley/R/packages/tests-clang/graphicalMCP.Rcheck/vign_test/graphicalMCP/vignettes/shortcut-testing_files/figure-html/create-graph-1.png
288x288 pixels, 3x8 bits/pixel, RGB
Input IDAT size = 15928 bytes
Input file size = 16018 bytes
Trying:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12352
zc = 9 zm = 8 zs = 1 f = 0
zc = 1 zm = 8 zs = 2 f = 0
zc = 9 zm = 8 zs = 3 f = 0
zc = 9 zm = 8 zs = 0 f = 5
zc = 9 zm = 8 zs = 1 f = 5
zc = 1 zm = 8 zs = 2 f = 5
zc = 9 zm = 8 zs = 3 f = 5
Selecting parameters:
zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12352
Output IDAT size = 12352 bytes (3576 bytes decrease)
Output file size = 12430 bytes (3588 bytes = 22.40% decrease)
*** caught segfault ***
address 0x5566, cause 'memory not mapped'
Traceback:
1: dev.off(dv)
2: eng_r(options)
3: block_exec(params)
4: call_block(x)
5: process_group(group)
6: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) if (xfun::pkg_available("rlang", "1.0.0")) rlang::entrace(e))
7: xfun:::handle_error(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) if (xfun::pkg_available("rlang", "1.0.0")) rlang::entrace(e)), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from lines ", loc) }, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc)
8: process_file(text, output)
9: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)
10: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...)
11: vweave_rmarkdown(...)
12: engine$weave(file, quiet = quiet, encoding = enc)
13: doTryCatch(return(expr), name, parentenv, handler)
14: tryCatchOne(expr, names, parentenv, handlers[[1L]])
15: tryCatchList(expr, classes, parentenv, handlers)
16: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) }}, error = function(e) { OK <<- FALSE message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
17: tools:::.buildOneVignette("shortcut-testing.Rmd", "/data/gannet/ripley/R/packages/tests-clang/graphicalMCP.Rcheck/vign_test/graphicalMCP", TRUE, FALSE, "shortcut-testing", "UTF-8", "/tmp/RtmpqHLcI0/working_dir/RtmpEuO27z/file3808e6428a7ab2.rds")
An irrecoverable exception occurred. R is aborting now ...
SUMMARY: processing the following file failed:
‘shortcut-testing.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang